Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865764:139865797:[+] chr6:90403827:90403850:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCA 3'


            ||||||||| ||||||||||


target  3':GUAGAAGGUCCAG----------AGAAGGUCAGA 5'

 -28.60 1 KARR-seq
chrX:139865803:139865836:[+] chr6:90403827:90403850:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCA 3'


            ||||||||| ||||||||||


target  3':GUAGAAGGUCCAG----------AGAAGGUCAGA 5'

 -28.60 3 KARR-seq
chrX:139865860:139865891:[+] chr6:90403826:90403850:[-] nonBSJ supported CDS

circRNA 5':ACGUCUUCCACCAAAUCCAGGUCU--UCCAGUCA 3'


            |:||| ||||||||| |||||||


target  3':AGUAGA---------AGGUCCAGAGAAGGUCAGA 5'

 -30.60 1 KARR-seq