5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865764:139865784:[+] | chr6:89773292:89773315:[-] | nonBSJ supported | Exon |
circRNA 5':UGUCUUCCAGAA--AGAAAUCCA 3' ||||:|| | |:||||||| target 3':GUAGAGGGACGAGGUUUUUAGGUA 5' |
-17.60 | 1 | KARR-seq |
| chrX:139866512:139866574:[+] | chr6:89773291:89773332:[-] | nonBSJ supported | Exon |
circRNA 5':ACGUCUUCCAACCAAGCCAUGUCUUCCAGAAAAUCCACGUCUUCCAGAAAAUAUA-UGUCUUCC 3' |:|||:|| ||: ||||:||| |||| |||||| ||||:|| target 3':GGUAGAGGG----------ACG--AGGUUUUU----------AGGUAAAUUAUAUAACAGGAGU 5' |
-32.90 | 4 | KARR-seq |
| chrX:139865860:139865888:[+] | chr6:89773291:89773315:[-] | nonBSJ supported | Exon |
circRNA 5':ACGUCUUCCACCAAAUCCAGGUCUUCCAG 3' |:|||:|| ||||:: |||| target 3':GGUAGAGGGACG---AGGUUUUU-AGGUA 5' |
-20.60 | 3 | KARR-seq |
| chrX:139865897:139865942:[+] | chr6:89773291:89773332:[-] | nonBSJ supported | Exon |
circRNA 5': CAUCUUCCGGAAAAAAUCCAGGUCUUCCAGCCAAUAUA-UGUCUUCC 3' |||||:|| ||||:: |||| |||||| ||||:|| target 3':GGUAGAGGGACG-----AGGUUUUU-AGGUAAAUUAUAUAACAGGAGU 5' |
-33.20 | 2 | KARR-seq |
| chrX:139865935:139865971:[+] | chr6:89773292:89773316:[-] | nonBSJ supported | Exon |
circRNA 5':UGUCUUCCUGAAGAUCCACGUCUUCCAGAAAAUCCAU 3' ||||:|||| :||||: |||||||| target 3':GUAGAGGGAC------------GAGGUU-UUUAGGUAA 5' |
-24.90 | 1 | KARR-seq |
| chrX:139865764:139865785:[+] | chr6:89773292:89773315:[-] | nonBSJ supported | Exon |
circRNA 5':UGUCUUCCAGAA--AGAAAUCCAG 3' ||||:|| | |:||||||| target 3':GUAGAGGGACGAGGUUUUUAGGUA 5' |
-18.10 | 3 | KARR-seq |
| chrX:139866598:139866630:[+] | chr6:89773290:89773315:[-] | nonBSJ supported | Exon |
circRNA 5':AUCCAUGUCUUCCUAUAUCUCCAGGUCUUCCAG 3' |||| |||:||| |||||:: |||| target 3': AGGU--AGAGGGAC---GAGGUUUUU-AGGUA 5' |
-23.60 | 1 | KARR-seq |
| chrX:139866212:139866243:[+] | chr6:89773291:89773315:[-] | nonBSJ supported | Exon |
circRNA 5':UCCAGGAAAUCCGUGUCUUCCAGCAAGUCCAC 3' ||| ||| ||: ||||: ||:|||| target 3': GGUAG---AGGGACG--AGGUU-UUUAGGUA 5' |
-22.70 | 1 | KARR-seq |
| chrX:139866310:139866358:[+] | chr6:89773289:89773332:[-] | nonBSJ supported | Exon |
circRNA 5':AUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCG-UGUCUUCC 3' ||||| ||:|| ||||:: |||| ||||:|| target 3':AAGGUA--GAGGGACG---AGGUUUUU-AGGUAAAUUAUAUAACAGGAGU 5' |
-29.60 | 2 | KARR-seq |
| chrX:139865869:139865897:[+] | chr6:89773290:89773315:[-] | nonBSJ supported | Exon |
circRNA 5':ACCAAAUCCAGGUCUUCCAGUCAAUCCAC 3' ||| ||| |: ||||: |||||| target 3':AGGUAGAGGGACG--AGGUUU-UUAGGUA 5' |
-21.30 | 1 | KARR-seq |
| chrX:139865450:139865474:[+] | chr6:89773289:89773316:[-] | nonBSJ supported | Exon |
circRNA 5':AUCCACAUCU----UCCAGACAAUCCAUG 3' |||| ||: ||||:| ||||||| target 3':AAGGUAGAGGGACGAGGUUU-UUAGGUAA 5' |
-20.90 | 1 | KARR-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chrX:139865897:139865942:[+] | circRNA | - | chrX:139865903-139865904 | C>T | LINC-JP | ICGC |
| chrX:139866310:139866358:[+] | circRNA | - | chrX:139866318-139866319 | C>T | BTCA-JP | ICGC |