Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865985:139866027:[+] chr6:87903778:87903823:[+] nonBSJ supported Intron

circRNA 5': UCCAUGUCU-----UCCAGUAACCUCCCAGUCUUCC-AGAAAAUCCACG 3'


            ||||:: || ||| || |||| |||:|| || ||||||


target  3':AAGGUGU-GACUUAAAGGGCAC--GAGGUUAAGAGGGAUCAA-UAGGUGG 5'

 -31.60 3 KARR-seq
chrX:139866016:139866031:[+] chr6:87903814:87903831:[+] nonBSJ supported Intron

circRNA 5':AGAAAA----UCCACGUCUU 3'


            ||||| |||||: ||


target  3': CUUUUUCAAAGGUGU-GAC 5'

 -8.90 3 KARR-seq