Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865496:139865538:[+] chr6:73361526:73361564:[+] nonBSJ supported Intron

circRNA 5':UCCA-AGAAGC--UCCAAGUCUUCCAGUAAAUCAAGUCUUCCAGCA 3'


            ||| ||| :||||: ||||||: |||| | ||


target  3':UGGUGUCUGUAAAGGGUUUUUAAGGUCGA------CAGACGAACG 5'

 -21.80 2 KARR-seq
chrX:139866349:139866399:[+] chr6:73387585:73387659:[+] nonBSJ supported Intron

circRNA 5':CGUGUCUUCCAG-CAAAU-----------------CCA-CGU-CUUCCAA-CA---AAGCCAUGUCU--UCCAUCAA 3'


            ||:|| ||| ||| ||| ||: |::|||| || ||| ||||| |||||||


target  3':ACAUAGU--GUCUGUUAUUACCGUCAUUAAUGAUCGGUGGCGUGGGGGUUAGUGGAUUCUGUACACCAUAGGUAGUC 5'

 -34.90 1 KARR-seq
chrX:139866349:139866414:[+] chr6:73387589:73387659:[+] nonBSJ supported Intron

circRNA 5':CGUGUCUUCCAG-CAAAUCCACGUCUUCCAACAAAGCCA-UGU-CUUCC-AUCAAAUUA---AUGUCU--UCCAG 3'


            ||:|| ||| ||| || ||||| :|: |::|| |||| |||| ||||


target  3':ACAUAGU--GUCUGUUAUUACCGUCAUUAAUGA-UCGGUGGCGUGGGGGUUAGUGGAUUCUGUACACCAUAGGU 5'

 -29.80 1 KARR-seq