Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865387:139865425:[+] chr6:42854300:42854338:[+] nonBSJ supported Intron

circRNA 5':UCCAGCGACUUCAAGUCUUCCAAUAAUCUCAAGGU--CUUC 3'


            ||||| |:|| ||:||| :||||||||||| ||:


target  3':UGGUCGGAGGAGAUAAGGAGG--GUUAGAGUUCCAAUGAGA 5'

 -39.10 6 KARR-seq
chrX:139865413:139865425:[+] chr6:42854300:42854315:[+] nonBSJ supported Intron

circRNA 5': UCUCAAGGU--CUUC 3'


            ||||||||| ||:


target  3':UAGAGUUCCAAUGAGA 5'

 -13.80 2 KARR-seq
chrX:139865412:139865425:[+] chr6:42854300:42854316:[+] nonBSJ supported Intron

circRNA 5': AUCUCAAGGU--CUUC 3'


            |||||||||| ||:


target  3':UUAGAGUUCCAAUGAGA 5'

 -14.40 3 KARR-seq