Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866293:139866344:[+] chr6:33170345:33170405:[+] nonBSJ supported CDS

circRNA 5':UCCUUGUCU---UCCCUCAAA--UCCAUAG---CUUCCGAAAAA-UCCAGGUCUUCCAGGA 3'


            |||: ||| :||||| ||| ||||| || |||:| ||


target  3':CGGAGAAGACUUGGGGAGAACAAAGGAAAAGAAGAAGGAGACUCGAGACGAAGAGGAACCA 5'

 -29.40 3 KARR-seq
chrX:139866293:139866340:[+] chr6:33170349:33170405:[+] nonBSJ supported CDS

circRNA 5':UCCUUGUCU---UCCCUCAAA--UCCAUAG---CUUCCGAAAAA-UCCAGGUCUUCC 3'


            |||: ||| :||||| ||| ||||| || |||:|


target  3':CGGAGAAGACUUGGGGAGAACAAAGGAAAAGAAGAAGGAGACUCGAGACGAAGAGGA 5'

 -27.10 3 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866293:139866340:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866293:139866344:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC