Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866204:139866218:[+] chr5:176918016:176918030:[-] nonBSJ supported CDS

circRNA 5':CCGG-GUCUUCCAGGA 3'


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target  3':AGCCACGGACACUCC 5'

 -11.80 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:176918016:176918030:[-] target - chr5:176918019-176918020 G>T BTCA-JP ICGC
chr5:176918016:176918030:[-] target - chr5:176918021-176918022 G>A EOPC-DE ICGC