Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865861:139865884:[+] chr5:171808601:171808622:[-] nonBSJ supported Intron

circRNA 5':CGUCUUCCACCAAAUCCAGGUCUU 3'


            ||| |||||| ||:|:


target  3':CCAGUCCUAC-UUUAGGGCCGGG 5'

 -15.20 2 KARR-seq
chrX:139865874:139865919:[+] chr5:171808514:171808555:[-] nonBSJ supported Intron

circRNA 5':AUCCAGGUCUUCCAGUCAAUCCACAUCUUCCGGAAAAAAUCCAGGU 3'


            || ||: |:| ||||| | ||| ||||


target  3': AGACCCGUUCAC-CGGACAGGUGACGUC--CCUCUUCACUGUCCC 5'

 -18.10 2 KARR-seq
chrX:139865882:139865928:[+] chr5:171808350:171808392:[-] nonBSJ supported Intron

circRNA 5':CUUCCAGUCAAUCCACAUCU-----UCCGGAAAAAAUCCAGGUCU--UCCAGCC 3'


            |||| |||| || |||| ||||:||: ||| ||


target  3':AAAGG-------GGUGACGAUAAAGAGGCAAUC----GGUCUAGGGAAGGACGA 5'

 -26.30 3 KARR-seq
chrX:139865892:139865928:[+] chr5:171808353:171808392:[-] nonBSJ supported Intron

circRNA 5':AUCCACAUCU-----UCCGGAAAAAAUCCAGGUCU--UCCAGCC 3'


            ||||| || |||| ||||:||: ||| ||


target  3':GGGGUGACGAUAAAGAGGCAAUC----GGUCUAGGGAAGGACGA 5'

 -25.40 1 KARR-seq
chrX:139865874:139865927:[+] chr5:171808514:171808562:[-] nonBSJ supported Intron

circRNA 5':AUCCAGGUCUUCCAGUCAAUCCACAUCUUCCGGAAAAAAUCCAGGUCUUCCAGC 3'


            || ||: |:| ||||| | ||| |||| |||


target  3': AGACCCGUUCAC-CGGACAGGUGACGUC--CCUCUUCACUGUCCCUCC-GUCC 5'

 -19.00 4 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:171808601:171808622:[-] target - chr5:171808621-171808622 C>G PACA-CA ICGC
chrX:139865874:139865919:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865874:139865927:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865882:139865928:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865892:139865928:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC