Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865821:139865852:[+] chr5:138969106:138969128:[+] nonBSJ supported Intron

circRNA 5':CCAGGUCUUCCAGUCAGUCAGUGUCUUCCAGA 3'


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target  3':UGUCC-------CAG--AGUGACAGCGUGUCC 5'

 -16.70 2 KARR-seq
chrX:139865794:139865872:[+] chr5:138969073:138969124:[+] nonBSJ supported Intron

circRNA 5': GUCAAUCAGUGUCUUCCAGAAA-GAA-AUCCAGGUCUUCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUUCCACCA 3'


            ||| ||| |||| ||| || ||| ||: ||| ||: |:||||||


target  3':CCAG--AGUGACAGCGUGUCCGACCUCCUAGAGCCG-----------AGUGACGUU-----------------GGAGGUGGA 5'

 -32.10 2 KARR-seq