Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866739:139866765:[+] chr5:137877228:137877250:[-] nonBSJ supported CDS

circRNA 5':UCAACU-GGCUCAAUAUCCAUGUCUUCC 3'


            ||| :|| |:|||| ||| |||


target  3':UGUUAAUUCG---UGUAGG-ACA-AAGU 5'

 -10.70 1 KARR-seq
chrX:139866716:139866765:[+] chr5:137877202:137877250:[-] nonBSJ supported CDS

circRNA 5':UCCAACAACUACCCA--GUCUUCCAU-CAACU-GGCUCAAUAUCCAUGUCUUCC 3'


            ||||| |:|||| ||| :|| |:|||| ||| |||


target  3':UGGUUGGACACUUAACCCGGAAGUCAUGUUAAUUCG---UGUAGG-ACA-AAGU 5'

 -22.80 1 KARR-seq
chrX:139866305:139866318:[+] chr5:137874199:137874212:[-] nonBSJ supported Intron

circRNA 5':CUCAAAUCCAUAGC 3'


            || ||:| |:||


target  3':CAGAUUGGUUGUCA 5'

 -5.50 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:137877202:137877250:[-] target - chr5:137877239-137877240 C>A PRAD-CA ICGC
chr5:137877228:137877250:[-] target - chr5:137877239-137877240 C>A PRAD-CA ICGC
chrX:139866305:139866318:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC