Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865596:139865622:[+] chr5:115886047:115886090:[-] nonBSJ supported Exon

circRNA 5': CCACGUCUUC----------------CAG-GAAAUCCAUGUCUU 3'


            ||| |||:| || |||| ||||||||


target  3':UGGUAAAGAGGUGGAAAACCAAGACUUGUAACUUU-GGUACAGAC 5'

 -20.00 1 KARR-seq
chrX:139865595:139865622:[+] chr5:115886047:115886090:[-] nonBSJ supported Exon

circRNA 5':UCCACGUCUUC----------------CAG-GAAAUCCAUGUCUU 3'


            ||| |||:| || |||| ||||||||


target  3':UGGUAAAGAGGUGGAAAACCAAGACUUGUAACUUU-GGUACAGAC 5'

 -20.10 1 KARR-seq