Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866567:139866603:[+] chr5:107687283:107687324:[-] nonBSJ supported Intron

circRNA 5':UGUCUUCCAACUAAGCUAC---GUCUUCC-AACAAAUCCAU 3'


            ||| |:||:|| ||| ||||| :||||


target  3':UCAGUCAAUCGGUUUGAGGUCUCAGUCCAAUUGUUAGGGUAA 5'

 -18.50 3 KARR-seq
chrX:139866567:139866603:[+] chr5:107687283:107687322:[-] nonBSJ supported Intron

circRNA 5':UGUCUUCCAACUAAGCUAC---GUCUUCC-AACAAAUCCAU 3'


            ||| |:||:|| ||| ||||| :|||


target  3':UCAGUCAAUCGGUUUGAGGUCUCAGUCCAAUUGUUAGGGU 5'

 -17.70 1 KARR-seq
chrX:139865649:139865680:[+] chr5:107642697:107642730:[-] nonBSJ supported Intron

circRNA 5':AUACAG-AUCUUCCAGCUAAUCCAUGUCU---UCCA 3'


            |||| ||||| || |||||| :|||


target  3': AUGUAAUAGAAA-UCCA-UAGGUAGUACUUUGGGUU 5'

 -12.70 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866567:139866603:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC