Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865514:139865546:[+] chr5:85915233:85915290:[+] nonBSJ supported CDS

circRNA 5':UUCC----------AGUAAAUCAAGUCUUCC---------------AGCAAAUCCAGU 3'


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target  3':UAGGAAUACAAAAUUCGUCAACCACAGAAUGAUGUUCCUUCCCACAUCGUUUACGUCU 5'

 -13.40 1 KARR-seq
chrX:139865503:139865546:[+] chr5:85915233:85915262:[+] nonBSJ supported CDS

circRNA 5':AGCUCCAAGUCUUCCAGUAAAUCAAGUCUUCCAGCAAAUCCAGU 3'


            ||| |||| || ||||||| |||


target  3':AUGAUGUUCCUUCCCACA--------------UCGUUUACGUCU 5'

 -12.10 1 KARR-seq