Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865687:139865738:[+] chr5:79287156:79287223:[+] nonBSJ supported Exon

circRNA 5':UCUGUGUCUUCCACCAAAUCCAAGU-CUUCCAGUAA-----------AUCU----AGUUCUUCCAGAA 3'


            |||: :|| || |:| |:|||||| |||| || |::|||:|


target  3':CGACGAGGAUUCUCAAGAAGAAUUAGGGAGGUCAGCAACAAAGAGAGUAGAGAGUUCUCGGGGGUUUA 5'

 -25.80 1 KARR-seq
chrX:139865716:139865734:[+] chr5:79287203:79287224:[+] nonBSJ supported Exon

circRNA 5':CAGUAAAUCU----AGUUCUUCC 3'


            ||: ||: ||||||||


target  3': UCGACGAGGAUUCUCAAGAAGA 5'

 -11.80 1 KARR-seq