Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866736:139866771:[+] chr5:64309517:64309550:[+] nonBSJ supported Intron

circRNA 5':CCAUCA--ACUGGCUCAAUAUCCAUGUCUUCCAACGUC 3'


            |||| |||: || ||| | ||||| |:


target  3':UGUAGACAUGAUAAAGGA--AGGGUCU--AGGUUUCGA 5'

 -15.40 1 KARR-seq
chrX:139866723:139866749:[+] chr5:64309516:64309535:[+] nonBSJ supported Intron

circRNA 5':ACUACCCAGUCUUCCAUCAACUGGCUC 3'


            || ||||| |||| :|||


target  3':GGAAGGGUCU--AGGUU-----UCGAA 5'

 -15.30 1 KARR-seq