Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866316:139866376:[+] chr5:36943851:36943903:[+] nonBSJ supported Intron

circRNA 5':AGCUUCCGAAAAAUCCAGGUC-UUCCAGGAAAUCCGUGUCUUCCAGCAAAUCCACGUCUUCC 3'


            ||| | |||: ||:| :||||||| ||| ||||| :||||||


target  3':ACGACUGA--UUUGA--CCGGUGAGGUCCU--AGG---AGAAGACCAAGAAAAA-UAGAAGGA 5'

 -34.00 2 KARR-seq
chrX:139866346:139866372:[+] chr5:36943918:36943942:[+] nonBSJ supported Intron

circRNA 5':AUCCGUGUCUUCCAGCAAAUCCACGUC 3'


            || |||||||||| || |||:|


target  3':AAGAAACAGAAGGUC-UUGUUGUGUA 5'

 -21.10 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866316:139866376:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866316:139866376:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC