Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866601:139866634:[+] chr5:36168747:36168792:[+] nonBSJ supported Intron

circRNA 5': CAUGU------CUUCCUA-------UAUCUCCAGGUCUUCCAGCAUC 3'


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target  3':UGUACGUAACAAGUAGGAACAUGAACAUAGAGAUCUUGGA--UCGUGU 5'

 -17.70 1 KARR-seq
chrX:139866612:139866634:[+] chr5:36168747:36168767:[+] nonBSJ supported Intron

circRNA 5':AUAUCUCCAGGUCUUCCAGCAUC 3'


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target  3':CAUAGAGAUCUUGGA--UCGUGU 5'

 -14.10 1 KARR-seq