5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865780:139865828:[+] | chr4:169927925:169927968:[-] | nonBSJ supported | CDS |
circRNA 5':AUCCAGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCU 3' ||| || ||||| |||:|| | || |||||| target 3': AGGGACAACAAC----UUAGUAUCAGGAGUACCGUCGAAAUGUCCAGU 5' |
-25.40 | 3 | KARR-seq |
| chrX:139865781:139865811:[+] | chr4:169923325:169923358:[-] | nonBSJ supported | CDS |
circRNA 5':UCCAG----GUCUUCC-AGUCAAUCAGUGUCUUCCA 3' |||| |:||| ||:||| ||:|| ||||| target 3':CGGUCUCAACGGAAAAUUCGGUU-GUUAC-GAAGGA 5' |
-26.80 | 4 | KARR-seq |
| chrX:139865783:139865828:[+] | chr4:169927918:169927968:[-] | nonBSJ supported | CDS |
circRNA 5':CAGGUCUUCCA-GUC----AAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCU 3' ||::|:||| || ||||| |||:|| | || |||||| target 3':AUCUGGGAGGGACAACAACUUAGUAUCAGGAGUACCGUCGAAAUGUCCAGU 5' |
-31.50 | 1 | KARR-seq |