Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866294:139866307:[+] chr4:120449892:120449903:[+] nonBSJ supported Exon

circRNA 5':CCUUGUCUUCCCUC 3'


            |||| ||||


target  3':CGAACUC--GGGAC 5'

 -7.90 2 KARR-seq
chrX:139865470:139865507:[+] chr4:120420813:120420847:[+] nonBSJ supported Exon

circRNA 5':CCAUGU-CUUCCGGACAAUCCAUGUCUUCCAAGAAG-CUC 3'


            ||:|: ||| :| ||| |:| ||||| ||


target  3':CGUGCGCGAACAUC----AGGGUCGGUGAA-UCUUCUGAC 5'

 -16.30 1 KARR-seq
chrX:139865488:139865539:[+] chr4:120420807:120420847:[+] nonBSJ supported Exon

circRNA 5':CCAUGUCUUCCAAGAAGCUCCAAGUCUUCCAGUAAAUC--AAGUCUUCCAGCAA 3'


            ||:|: ||| |||| ||||: ||| || |||


target  3':CGUGCG----------CGAACAUCAG--GGUCGGUGAAUCUUCUGACUC-CGUC 5'

 -18.40 1 KARR-seq