Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866442:139866449:[+] chr4:99212053:99212060:[+] nonBSJ supported Intron

circRNA 5':GUCUUCCA 3'


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target  3':GAGAAGGA 5'

 -8.80 1 KARR-seq
chrX:139866476:139866515:[+] chr4:99212069:99212106:[+] nonBSJ supported Intron

circRNA 5':AUGUCUUCCAACAAA-GGUACGUCUUCCAGAAAAUCCACGU 3'


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target  3': ACGGGGAAAUUAUAAUCACACUG-GGGUCAACAC-GUGUC 5'

 -11.90 1 KARR-seq