Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865785:139865819:[+] chr4:39977355:39977381:[-] nonBSJ supported Intron

circRNA 5':GGUCUUCCAGUCAAUCAGUG-UCUUCCAGAAAGAAA 3'


            | |||| ||: || ||:| ||: |||||


target  3':AC-GAAGUUCG-------ACAAGGAUGUUCUUCUU 5'

 -11.90 2 KARR-seq
chrX:139865876:139865921:[+] chr4:39977290:39977331:[-] nonBSJ supported Intron

circRNA 5': CCAG---GUCUUCCAGUCAAUCC--ACAUCUUCCGGAAAAAAUCCAGGUCU 3'


            |||: ||| |||||: || ||||||:| ||| ||||


target  3':UGGUUUUACAG-AGGUCGUAACGGUUUGUAGAGGACCU---------CCAGU 5'

 -32.80 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865876:139865921:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC