Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866675:139866739:[+]	chr4:6711287:6711347:[-]	nonBSJ supported	CDS	circRNA 5':CGUCUUCCAGCAUCUCUGUGUCUUCCAGCAUCUUCAUGUCUUCCAACAA--CUACCCAGUCU---UCCAU 3' \|\|\|:\|\|\| \|\| \| \|: \|\|\|\|\|\|\|:\|\|:\|\|: \|\|:\|\| \|:\|\|\| \|\|\|\| \|\|\|\| target 3':UUAGGAGG------AGCC-CG--AGGUCGUGGAGGUGAAGGAGUCCGCGAAGGUGGAGCAGAUACAGGUC 5'	-50.60	2	KARR-seq
chrX:139866634:139866673:[+]	chr4:6709946:6709990:[-]	nonBSJ supported	3UTR	circRNA 5': CUCCAGGGCUU--CCAGCAUCUGCUC---GUCUUCCAA--CAUCUCC 3' \| \|\|\| \|\|\|\|: \|\|\|: \|\| \|\|\|\|\|\|\|\| \|\|:\|\|\| target 3':AGUGGU-CCGAGUUGGUUCAU--CGCAUCACAGAAGGUAACGUGGAGA 5'	-32.40	3	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr4:6711287:6711347:[-]	target	-	chr4:6711303-6711304	C>A	LICA-CN	ICGC