Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866512:139866557:[+] chr3:135969347:135969387:[+] nonBSJ supported CDS

circRNA 5':ACGUCUUCCAACCAA--GCCAUGUCUUCCAGAAAAUCCA-CGUCUUCCA 3'


            |||| ||| :||:|||| || ||: |||


target  3':CGCAGUUAUGCCGCAACCGGG--GGAGGGUC------GUCGCGCCAGGC 5'

 -23.20 3 KARR-seq
chrX:139865955:139865976:[+] chr3:135969347:135969367:[+] nonBSJ supported CDS

circRNA 5': UCUUCCAGAAAAUCCAUGUCUU 3'


            |||:|||| |||:


target  3':GGGAGGGUCGUCGCGC--CAGGC 5'

 -13.50 1 KARR-seq
chrX:139866533:139866557:[+] chr3:135969347:135969367:[+] nonBSJ supported CDS

circRNA 5': UCUUCCAGAAAAUCCA-CGUCUUCCA 3'


            |||:|||| || ||: |||


target  3':GGGAGGGUC------GUCGCGCCAGGC 5'

 -15.70 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr3:135969347:135969367:[+] target 2762697 chr3:135969351-135969352 CCGCGCTGCTGGGAG>C Propionic_acidemia ClinVar
chr3:135969347:135969367:[+] target 666048 chr3:135969353-135969354 GCGC>CCT Propionic_acidemia ClinVar
chr3:135969347:135969367:[+] target 838787 chr3:135969364-135969365 A>AG Propionic_acidemia ClinVar
chr3:135969347:135969387:[+] target 1677112 chr3:135969369-135969370 GCCAACGCCGTATTGACGCGCAGCACAAGCGAGTGAGTCCTGAGGGGC>G Propionic_acidemia ClinVar
chr3:135969347:135969387:[+] target 2677528 chr3:135969384-135969385 ACGCGCAGCACAA>C Propionic_acidemia ClinVar
chr3:135969347:135969387:[+] target 2762697 chr3:135969351-135969352 CCGCGCTGCTGGGAG>C Propionic_acidemia ClinVar
chr3:135969347:135969387:[+] target 3588603 chr3:135969385-135969386 C>CCCCCTTGTGACGCTTGT Propionic_acidemia ClinVar
chr3:135969347:135969387:[+] target 666048 chr3:135969353-135969354 GCGC>CCT Propionic_acidemia ClinVar
chr3:135969347:135969387:[+] target 838787 chr3:135969364-135969365 A>AG Propionic_acidemia ClinVar
chr3:135969347:135969387:[+] target - chr3:135969378-135969379 G>T LICA-CN ICGC