Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865741:139865790:[+] chr3:57078762:57078791:[-] nonBSJ supported Intron

circRNA 5':AUCUAGAUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUU 3'


            ||||| ||||| |||| |||| |||:||:


target  3':GAGAUC-AGAAG-----------------GGUCAA-CUUUUAGUCUAGG 5'

 -24.40 2 KARR-seq
chrX:139866758:139866828:[+] chr3:57107419:57107484:[-] nonBSJ supported Intron

circRNA 5':UGUCUUCCAACGUCUCCAGUGUGCUGAUCUUCUGACAUUCAGGUCUUCCAGUGUCU--GCAAUAUCCAGGUAU 3'


            |:| |||:||| || ||| || | ||| || ||||:|||


target  3':UCGGUGACCUCAACCCGUCGCACC-CUUC--GACACUUUCACCUGUUCG-CACUUUCUCGA---AGGUUCAUC 5'

 -26.40 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866758:139866828:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC