Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866770:139866792:[+]	chr3:48310146:48310170:[+]	nonBSJ supported	CDS	circRNA 5': UCUCCA--GUGUGCUGAUCUUCUGA 3' \|\|\|\|\| \|\|\|\|\| \|\| \|\|:\|\|\|\|\| target 3':AAGAGGGAACACAC-AC-AGGAGACUA 5'	-25.50	1	KARR-seq
chrX:139866770:139866819:[+]	chr3:48310103:48310170:[+]	nonBSJ supported	CDS	circRNA 5': UCUCCA--GUGUGCUGAUCUUCUGACAUUC-----AGGU----CUUCCAGU---------GUCUGCAAUA 3' \|\|\|\|\| \|\|\|\|\| \|\| \|\|:\|\|\|\|\| \|\| \|\|\|\| \|\|\| \|\|\|: \|:\|::\|\|\|\| target 3':AAGAGGGAACACAC-AC-AGGAGACUAC-AGACUACUCCAUACCGAACGUCGAUUUCGGAGCGGGUGUUAC 5'	-39.00	1	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866770:139866819:[+]	circRNA	-	chrX:139866793-139866794	C>T	LICA-CN	ICGC