Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866405:139866461:[+]	chr3:47036842:47036890:[+]	nonBSJ supported	5UTR	circRNA 5':UGUC-UUCCAGCCUAC-UUGUGUCUUCCAACAAAGGUA-CGUCUUCCAACAAAGGUACGU 3' \|:\| \|\|\|\|\|\|\|\|\| :\| :\|:\|\| \|\|\| \|\| \|\|\|\|\| \|\|: \|\| target 3':CCGGAAAGGUCGGAGUCGAGGCGGA---------CCAAGGCUC-AGGUUAGGACCG-GCC 5'	-34.20	4	KARR-seq
chrX:139866405:139866425:[+]	chr3:47036867:47036890:[+]	nonBSJ supported	5UTR	circRNA 5':UGUC-UUCCAGCCUAC-UUGUGU 3' \|:\| \|\|\|\|\|\|\|\|\| :\| :\|: target 3':CCGGAAAGGUCGGAGUCGAGGCGG 5'	-20.20	2	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr3:47036842:47036890:[+]	target	-	chr3:47036877-47036878	A>T	LINC-JP	ICGC
chr3:47036867:47036890:[+]	target	-	chr3:47036877-47036878	A>T	LINC-JP	ICGC