Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865589:139865621:[+] chr3:32789906:32789950:[+] nonBSJ supported Intron

circRNA 5':GGAAAAUCCA-CGUCUUCC----------AGGAAAUC--CAUGUCU 3'


            |||||:| |||||:|| || |||: ||::||


target  3':GUUUUUGGAUAGCAGAGGGUUUACAUACGUCGUUUGUAAGUGUAG 5'

 -22.20 2 KARR-seq
chrX:139865589:139865609:[+] chr3:32789929:32789950:[+] nonBSJ supported Intron

circRNA 5':GGAAAAUCCA-CGUCUUCCAGG 3'


            |||||:| |||||:|||:


target  3':GUUUUUGGAUAGCAGAGGGUUU 5'

 -18.90 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr3:32789906:32789950:[+] target - chr3:32789914-32789915 T>A LAML-KR ICGC