Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865616:139865662:[+] chr3:9476521:9476553:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAAUAAUUUCAAGGUCUUCCAUCAAAUACAGAUCUUCCA 3'


            || ||||| |:|||| :|:|||||


target  3':GAC-GAAGGCGGCUAC---UUCAGAUUA----------UUGGAAGGG 5'

 -17.90 3 KARR-seq
chrX:139865614:139865662:[+] chr3:9476521:9476555:[+] nonBSJ supported CDS

circRNA 5': CCAUGUCUUCCAAUAAUUUCAAGGUCUUCCAUCAAAUACAGAUCUUCCA 3'


            || || ||||| |:|||| :|:|||||


target  3':AGG-AC-GAAGGCGGCUAC---UUCAGAUUA----------UUGGAAGGG 5'

 -20.30 1 KARR-seq
chrX:139865613:139865662:[+] chr3:9476521:9476556:[+] nonBSJ supported CDS

circRNA 5': UCCAUGUCUUCCAAUAAUUUCAAGGUCUUCCAUCAAAUACAGAUCUUCCA 3'


            ||| || ||||| |:|||| :|:|||||


target  3':CAGG-AC-GAAGGCGGCUAC---UUCAGAUUA----------UUGGAAGGG 5'

 -21.60 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr3:9476521:9476553:[+] target 3764623 chr3:9476547-9476548 GA>G Intellectual_disability-facial_dysmorphism_syndrome_due_to_SETD5_haploinsufficiency ClinVar
chr3:9476521:9476555:[+] target 3764623 chr3:9476547-9476548 GA>G Intellectual_disability-facial_dysmorphism_syndrome_due_to_SETD5_haploinsufficiency ClinVar
chr3:9476521:9476556:[+] target 3764623 chr3:9476547-9476548 GA>G Intellectual_disability-facial_dysmorphism_syndrome_due_to_SETD5_haploinsufficiency ClinVar
chr3:9476521:9476553:[+] target - chr3:9476537-9476538 T>C LINC-JP ICGC
chr3:9476521:9476555:[+] target - chr3:9476537-9476538 T>C LINC-JP ICGC
chr3:9476521:9476556:[+] target - chr3:9476537-9476538 T>C LINC-JP ICGC