Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866316:139866350:[+] chr22:42217720:42217741:[+] nonBSJ supported Intron

circRNA 5':AGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCG 3'


            ||:||| |||||:| ||| |||


target  3':GUGGAGG------AGGUCUAC----UCCG--AGG 5'

 -18.70 1 KARR-seq
chrX:139866366:139866378:[+] chr22:42217730:42217742:[+] nonBSJ supported Intron

circRNA 5':CCACGUCUUCCAA 3'


            ||| ||:||||


target  3':AGUGGAGGAGGUC 5'

 -16.50 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866316:139866350:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866316:139866350:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC