Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865837:139865882:[+] chr22:36696176:36696226:[-] nonBSJ supported CDS

circRNA 5': GUCAGU-----------GUCUUCCAGAAAAAUCUACGUCUUCCACCAAAUCCAGGUC 3'


            |:|||: |||:||||| |||| | ||:||| ||||| |


target  3':CCGGUCGAACGUCAAGACCAGGAGGUCCUACUAGACG-AGGAGG------AGGUCGAA 5'

 -36.20 3 KARR-seq
chrX:139866441:139866452:[+] chr22:36691586:36691596:[-] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACA 3'


            |||:||||||


target  3': CAGGAGGUUGA 5'

 -15.90 2 KARR-seq
chrX:139866121:139866163:[+] chr22:36692892:36692930:[-] nonBSJ supported CDS

circRNA 5':UCCAA--UGGCCUCCAGGUCUUCCAGACUAUCCAUGUCUU--CCAGA 3'


            ||| :||||| || ||:||| || |||| ||||


target  3':CGGUCCCGCCGGACCUCGAGGAGG------AGAA--AGAACCGGUCG 5'

 -28.40 2 KARR-seq
chrX:139866293:139866348:[+] chr22:36684344:36684382:[-] nonBSJ supported CDS

circRNA 5':UCCUUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAA-AUC 3'


            || ||| ||: ||||||||:| |||| |||


target  3':CGGCUCAGCUACACG---------CGG---------AGGUCCAGGAAGUCCAGGUAG 5'

 -26.20 3 KARR-seq
chrX:139866459:139866470:[+] chr22:36691586:36691596:[-] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACA 3'


            |||:||||||


target  3': CAGGAGGUUGA 5'

 -15.90 1 KARR-seq
chrX:139865784:139865827:[+] chr22:36696193:36696226:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGUCA-AUCAGUGUCUUCCAGAAAGAAAUCCAGGUC 3'


            ||||:||||| ||| |: ||:||| ||||| |


target  3': CCAGGAGGUCCUACUAGACG-AGGAGG---------AGGUCGAA 5'

 -32.10 3 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr22:36692892:36692930:[-] target 2627059 chr22:36692908-36692909 GCTC>G Macrothrombocytopenia_and_granulocyte_inclusions_with_or_without_nephritis_or_sensorineural_hearing_loss ClinVar
chrX:139866293:139866348:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC