Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866229:139866287:[+]	chr22:29695677:29695728:[+]	nonBSJ supported	CDS	circRNA 5':UUCCAGCAAGUCCACGUCUUCCAACAAAGCCAUGUCU---UCCAGACUAUCCAUGUCUUCCA 3' \|\|\|\| \|:\|\| \|\| \|: \|\|\| \|\|\|\|\|\|: \|\|\| \|\|\|\| \|\|\|:\| \|: \|\| target 3':CAGGUA---CGGG-GCCGGUGGUGCCUUCGGUGGAGACAGAGGU------GGUGCCGGUGGA 5'	-43.30	1	KARR-seq
chrX:139866437:139866467:[+]	chr22:29695229:29695264:[+]	nonBSJ supported	CDS	circRNA 5':GGUACGUCU----UCCAACAAAGGUACGUC-UUCCA 3' \|:\|\| \|\|\| \|\|\|\| \|:\|\| \| \|\|\|\|\| target 3':ACGUG-AGACAAGAGGUCCGCUUCAAGACCAAAGGUG 5'	-15.00	1	KARR-seq
chrX:139866405:139866467:[+]	chr22:29695191:29695237:[+]	nonBSJ supported	CDS	circRNA 5':UGUCUUC-CAGCCUACUUGUGUCUUCCAACAAAGGUACGUCUUCCAACAAAGGUACGUCUUCCA 3' \|\| \|:\| \|\|:\|\| \|:\|\|::\| \|\|\|\| \|\|\|:\|\| \|\|\| :\| :\|\| \|\|\| target 3':CCAAAGGUGUUGG--GGACGUA------UGUUA--AUGUAG-----UGUCGUCUU-UAGU-GGU 5'	-23.00	1	KARR-seq