Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866732:139866755:[+] chr22:28979425:28979452:[-] nonBSJ supported Intron

circRNA 5': UCUUCC-----AUCAACUGGCUCAAUAUC 3'


            |||||| |||| ||| |||||:


target  3':AAGAAGGAAUUUUAGUCGACAC-GUUAUG 5'

 -16.40 1 KARR-seq
chrX:139865986:139865990:[+] chr22:28600739:28600743:[-] nonBSJ supported Intron

circRNA 5':CCAUG 3'


           ||||


target  3':GGUAA 5'

 -3.00 3 KARR-seq
chrX:139865649:139865676:[+] chr22:28448383:28448407:[-] nonBSJ supported Intron

circRNA 5':AUACAGAUCUUCCAGCUAAUCCAUGUCU 3'


            ||||:| | ||| || |||


target  3': GUGUUUCG-AGG-CGUUCUAAGUCAGU 5'

 -11.70 1 KARR-seq
chrX:139866021:139866047:[+] chr22:28600704:28600740:[-] nonBSJ supported Intron

circRNA 5':AUCCA-------CGUCUUCCCAAC---AAUCCAAGUC 3'


            |||| |:|| :|||| ||||| |:||


target  3':GAGGUCAAUAUGGUAG-GGGGUCUCUUUUAGGGUUAGG 5'

 -18.20 2 KARR-seq
chrX:139866646:139866696:[+] chr22:28979404:28979448:[-] nonBSJ supported Intron

circRNA 5':CAGCAUCUG-CUCGUCUUCCAACAUCUCCACGUCUUCCAGC--AUCU-CUGUGUC 3'


            |||| || || |||| || |||||| ||| |||||:


target  3':UUCGUUUACUGA--------UUGUUAAGUA--AGAAGGAAUUUUAGUCGACACGU 5'

 -23.10 1 KARR-seq