Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865412:139865443:[+] chr21:45139747:45139777:[+] nonBSJ supported Intron

circRNA 5': AUCUCAAG----GUCUUCCAGAUAAUCCUGAGCUUC 3'


            |:|||| |||||| |||||| ||||


target  3':CUGGAGUGAGCCGCAGAAGA------AGGACU-GAAGG 5'

 -21.50 2 KARR-seq
chrX:139865412:139865441:[+] chr21:45139740:45139777:[+] nonBSJ supported Intron

circRNA 5': AUCUCAA--GGU-----CUUCCAGAUAAUCCUGAGCU 3'


            |:|||| ||: ||||| ||: :||:: ||


target  3':CUGGAGUGAGCCGCAGAAGAAGGACUGAAGGGGUGCGU 5'

 -22.70 1 KARR-seq