5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865804:139865850:[+] | chr20:43582175:43582232:[-] | nonBSJ supported | Intron |
circRNA 5': GUCUUCCA--GAAA-GAAA--UC-CAGGUCUUCCAGUCA-GUCAGUG---UCUUCCA 3' |||: || | || :| ||::||:| ||| |:| ||: |||||| target 3':UUAGGUGGAGACGCGACUACUGGGAGUUUAGGAAUACAGACCGGACAUAAAAGAAGGA 5' |
-23.60 | 3 | KARR-seq |
| chrX:139866184:139866244:[+] | chr20:43585760:43585819:[-] | nonBSJ supported | Intron |
circRNA 5':AUCUAUAGCU-UCCAAAAAAUC-CGGGUCUUC-CAGGAAAUCCGUGUCUUCCAGCAAGUCCACG 3' |||| || ||| :| |:|| || |||: || |||:| || |||| target 3':AAGAUUCCGUCAGGAAUG--GGAGUCCUU-AGCGUCUCCGAGUU-CAGGAAGUGACACCGGUGG 5' |
-30.10 | 1 | KARR-seq |
| chrX:139865832:139865850:[+] | chr20:43582210:43582232:[-] | nonBSJ supported | Intron |
circRNA 5':AGUCA-GUCAGUG---UCUUCCA 3' ||| |:| ||: |||||| target 3':ACAGACCGGACAUAAAAGAAGGA 5' |
-14.40 | 3 | KARR-seq |