Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865336:139865369:[+] chr20:30283057:30283090:[-] nonBSJ supported Intron

circRNA 5':CCAGGGUU-UCCGA-UGGCACCUGUGUCAAGGUCUU 3'


            |||:| ||| |:: |||||| ||||


target  3':AGUCUCUCUAGGAAGAUUUUGGACAGUGA---AGAAA 5'

 -19.80 1 KARR-seq
chrX:139865335:139865357:[+] chr20:30283102:30283124:[-] nonBSJ supported Intron

circRNA 5': UCCAGGG-UUUCCGAUGGCACCUG 3'


            |||| |||||: || |||


target  3':GAGGUACGGAAAGGUGA-CG-GGAA 5'

 -16.90 1 KARR-seq