Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865754:139865817:[+]	chr20:23343068:23343126:[+]	nonBSJ supported	5UTR	circRNA 5':AGUCAAUCAGUGUC-UUCCAGAAAGAA-AUCCAGGUCUUCCAGUCAAUCAGUGUCUUCCAGA-AAGA 3' \|:\| \|\| \| \|:\| :\|\|\|\| \|\|\|\| \|:\|\|\|\|: \|\|\|: \|\|\|\| \|\|\| target 3':GCGGCGAG-C-CGGUGAGGU--UUCUGCUGGGUCUCUUGUUUGAUGACGUCGGU----GUCUCUUCG 5'	-27.30	1	KARR-seq
chrX:139865730:139865772:[+]	chr20:23343061:23343114:[+]	nonBSJ supported	5UTR	circRNA 5':CUUCCAGAAAA-AUCUAGAUCUUC--------CAGUCAAUCAGUG--UCUUCCA 3' \|\|\|\|\|:\| \|:\|:\|\|\| \|\|\|:\|\| \|\| :\|:\|\|\| target 3':UGAGGUUUCUGCUGGGUCUCUUGUUUGAUGACGUCGGUGUCUCUUCGGGGAGGA 5'	-25.00	1	KARR-seq