Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866669:139866722:[+] chr20:20023080:20023135:[-] nonBSJ supported CDS

circRNA 5': UCUC-CACGUCUUCCAGCAUCUCUGUGUC---UUCCAGCAUCUUCAUGUCUUCCAACA 3'


            |||| |||| ||| |||| ||||:||| ||| | || || || || |||


target  3':AAGAGAGUGCCGAA-GUCGA--AGACGCAGUGAAAGAUGGUUCGCGUUCAUUAGUUUGG 5'

 -37.40 1 KARR-seq
chrX:139866669:139866742:[+] chr20:20023080:20023144:[-] nonBSJ supported CDS

circRNA 5': UCUC-CACGUCUUCCAGCAUCUCUGUGUCUUCCAGCAUCUUCAUGUCUUCCAA---CAACUACCCAGUCUUC-CAUCAA 3'


            |||| |||| ||| |||| ||||:||| ||| |||| ||| || ||: |: |||||


target  3':AAGAGAGUGCCGAA-GUCGA--AGACGCAGUGAA------------AGAUGGUUCGCGUUCAUUAGUUUGGUACGUAGUA 5'

 -39.50 1 KARR-seq