Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866531:139866588:[+] chr2:239237750:239237794:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGAAAAUCCACGUCUUCCAGAAAAUAUAUGUCUUCCAACUAAGCUACGUC 3'


            ||||: ||| || ||:|| |||||| ||| |||


target  3': CAGAGAC------AGG-GC-GAGGGACAACGGAG-ACAGAAAGACAG--CGA-GCAA 5'

 -23.70 3 KARR-seq
chrX:139866531:139866602:[+] chr2:239237735:239237794:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGAAAAUCCACGUCUUCCAGAAAAUAUAUGUCUUCCAACUAAGCUACGUCUUCCAACAAA-UCCA 3'


            ||||: ||| || ||:|| |||||| ||| ||| || :||


target  3': CAGAGAC------AGG-GC-GAGGGACAACGGAG-ACAGAAAGACAG--CGA-GCAACAGACCGGACCGGGC 5'

 -25.90 2 KARR-seq
chrX:139866522:139866557:[+] chr2:239237741:239237780:[+] nonBSJ supported CDS

circRNA 5':ACCAA--GCCA-UGUCUUCCAGAAAAUCCACGUCUU-CCA 3'


            || ||| |||||| || |||| ||


target  3':GGGACAACGGAGACAGAAAGACAGCGAGCAACAGACCGGA 5'

 -17.60 5 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:239237735:239237794:[+] target - chr2:239237751-239237752 A>G LAML-KR ICGC
chr2:239237741:239237780:[+] target - chr2:239237751-239237752 A>G LAML-KR ICGC
chr2:239237750:239237794:[+] target - chr2:239237751-239237752 A>G LAML-KR ICGC
chrX:139866531:139866602:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC