Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866572:139866594:[+]	chr2:232320154:232320181:[-]	nonBSJ supported	CDS	circRNA 5': UCCA--ACUAA-GCUACGUCUUCCAA 3' \|\|\| \|\|:\| :\|: \|\|\|\|:\|\|\|\|\| target 3':GAGGAGAUGGUGGUGGAGCAGGAGGUUU 5'	-22.70	5	KARR-seq
chrX:139866522:139866594:[+]	chr2:232320195:232320261:[-]	nonBSJ supported	CDS	circRNA 5':ACCAAGCCAUGUCUUCCAGAAAAUCCACG-UCUUCCAGAAAAUAUAUGUCU--UCCAACUAAGCUACGUCUUCCAA 3' \|\| :\|\|\|:\| \|::\|\| \|\|\| \|\|\|\| \|\| :\|\| \|:\|: \|\|\|\|\| \|:\|\| :\| \|\|\|\|\| target 3': GG--UGGUGCUGGGGG-CUUC--GGUGGAAGUGGGAAUCCAAAC--CGGGUCAGGUUCCAUUGAAAUA-AAGGUA 5'	-38.80	6	KARR-seq
chrX:139866677:139866741:[+]	chr2:232325188:232325244:[-]	nonBSJ supported	CDS	circRNA 5':UCUUCCAGCAUCUCUGUGUCUUCCAGCAUCUUCA--UGUCUUCCAACAACUACCCAGUCUUCCAUCA 3' \|\|\|\|\|\| \|\|\|\|\| \|\|\|\| \|\| \|\| \|\|: \|\|\| \|\|\| \|\|\|\| \|\| target 3':GGAAGGUGAA--AGACAAAGAAC--CGAAGUCCUCGACGAAAGACAAACC---GGUA--AAGGAAG 5'	-27.70	1	KARR-seq
chrX:139866002:139866026:[+]	chr2:232320121:232320141:[-]	nonBSJ supported	CDS	circRNA 5':CCUCCCA-GUCUU--CCAGAAAAUCCAC 3' \|\|\|\|\| \|:\|\|: \|\|\| \|\|\| target 3': GAGGGGCCGGAGACGGU------GGUU 5'	-16.40	1	KARR-seq
chrX:139866479:139866499:[+]	chr2:232325480:232325503:[-]	nonBSJ supported	CDS	circRNA 5': UCUUCCAACAAAGGUACG-UCU 3' \|\|\|\|\| \| \|\| :\|\|\| \|\|\| target 3':UAGAAGUAGGAGUCGGUGCAAGAA 5'	-13.70	1	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866522:139866594:[+]	circRNA	-	chrX:139866592-139866593	C>A	LICA-CN	ICGC
chrX:139866572:139866594:[+]	circRNA	-	chrX:139866592-139866593	C>A	LICA-CN	ICGC