Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865782:139865827:[+] chr2:223433594:223433640:[-] nonBSJ supported Exon

circRNA 5':CCAGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAA--UCCAGGUC 3'


            |||| || || | |||| ||| || |:|:


target  3':CGUCCUGACACUCCGACA-UCACCAUCUUAAAUUCAAAAAAGAUUCGA 5'

 -9.60 1 KARR-seq
chrX:139865761:139865794:[+] chr2:223433625:223433660:[-] nonBSJ supported Exon

circRNA 5':CAGUGUCUUCC-AGAAAGAAAUCCAGGUC--UUCCAG 3'


            ||| ||| || |||| |::|| |||||


target  3':UUCAAAAAAGAUUCGAUCUUGUU-UUUAGUUAAGGUA 5'

 -12.30 1 KARR-seq