Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865881:139865924:[+] chr2:219134214:219134258:[-] nonBSJ supported CDS

circRNA 5': UCUUCCAGUCAA--UCCACAUCUUCCGGAAAAAAU-CCAGGUCUUCC 3'


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target  3':AAGAAGG--AGUUUCAGGUGUAGAAGGUAGAGGACCCGGUCCAGUAG 5'

 -45.70 1 KARR-seq
chrX:139865893:139865924:[+] chr2:219134228:219134258:[-] nonBSJ supported 5UTR

circRNA 5':UCCACAUCUUCCGGAAAAAAU-CCAGGUCUUCC 3'


            |||||||||||: ||||||| ||


target  3': GGUGUAGAAGGUAGAGGACCCGGUCCAGUAG 5'

 -33.70 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865881:139865924:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865893:139865924:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC