Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865820:139865866:[+]	chr2:145147024:145147055:[-]	nonBSJ supported	CDS	circRNA 5':UCCAGGUCUUCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUU 3' \|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\| target 3':CGGU--AGAAGGUAUA------ACAGAAGG-------AGCACCAGAC 5'	-23.40	1	KARR-seq
chrX:139865819:139865869:[+]	chr2:145147030:145147082:[-]	nonBSJ supported	CDS	circRNA 5':AUCCAG---GUCUUCCA-GUCAGUCAG---UGUCUUCCAGAAAAAUCUACGUCUUCCA 3' \|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\| \|\| \|\|\|\|\| \|\|: \|:\|\|:\|\|\| target 3':AAGGUAUAACAGAAGGAGCAC-CAGACUAAACCAAAGGUAAA---AGG-GUAGGAGGC 5'	-33.50	1	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr2:145147030:145147082:[-]	target	-	chr2:145147074-145147075	C>T	BTCA-JP	ICGC