5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139866636:139866711:[+] | chr2:141473579:141473635:[-] | nonBSJ supported | CDS |
circRNA 5':CCAGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUGUCUUCCAGCAUCUUCAU 3' ||||| ||| |:| ||| || |:| || ||||| ||| ||||| target 3':GGUCCGGAACCCUUUAUUAAUGUAU-------------UGCCUU---UCUUGGUAACUCAGAA---CGUUGAAGUU 5' |
-25.00 | 1 | KARR-seq |
| chrX:139865823:139865851:[+] | chr2:141625270:141625305:[-] | nonBSJ supported | CDS |
circRNA 5':AGGUCUUCCAGUCAGU-CAGUGU------CUUCCAG 3' ||||:||||||| || ||||: ||:||| target 3':ACCAGGAGGUCAGACAGGUCAUCUGAAGUGAGGGUA 5' |
-34.40 | 2 | KARR-seq |
| chrX:139865832:139865882:[+] | chr2:142838337:142838387:[-] | nonBSJ supported | Intron |
circRNA 5':AGUCAGUCAGUGUCUUCCAGAAAAAU-------CUACGUCUUCCACCAAAUCCAGGUC 3' ||| | | |::|: || |||| ||||: ||| |||| ||||| target 3':CCAGACUGAAAUGGGUGGACUUUGAGGACCUAUGAUGU-GAA--UGGU----GUCCAU 5' |
-22.00 | 1 | KARR-seq |
| chrX:139866672:139866721:[+] | chr2:141473555:141473631:[-] | nonBSJ supported | CDS |
circRNA 5':CCACGUCUUCCAGCAUCUCUGUGUCUUCCA-GC----------------------------AUCUUCAUGUCUUCCAAC 3' |||: || || |||| || |||| || |:| ||||| |||| target 3':CGUGUCGAUA-UC-UAGAACCAACU-AGGUCCGGAACCCUUUAUUAAUGUAUUGCCUUUCUUGGUAACUCAGAACGUUGA 5' |
-20.30 | 1 | KARR-seq |