Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865972:139866016:[+] chr2:128147353:128147411:[+] nonBSJ supported Intron

circRNA 5':GUCUUCCAGAAAAUCCAUGUCU----------------UCCAGUAACCUCCCAGUCUUCCA 3'


            |||:||| || ||| |||| |||| | |:|||||


target  3':GGGAGGGUACUAC--GUCCAGUGUCACACAAUAGUAAUAGGUAAAUGGACAGACGGAAGGA 5'

 -27.60 1 KARR-seq
chrX:139865985:139866016:[+] chr2:128147353:128147408:[+] nonBSJ supported Intron

circRNA 5': UCCAUGUCU-----------------------UCCAGUAACCUCCCAGUCUUCCA 3'


            |||||| |||| |||| | |:|||||


target  3':AGGGUACUACGUCCAGUGUCACACAAUAGUAAUAGGUAAAUGGACAGACGGAAGGA 5'

 -24.60 2 KARR-seq
chrX:139865973:139866016:[+] chr2:128147353:128147411:[+] nonBSJ supported Intron

circRNA 5': UCUUCCAGAAAAUCCAUGUCU----------------UCCAGUAACCUCCCAGUCUUCCA 3'


            |||:||| || ||| |||| |||| | |:|||||


target  3':GGGAGGGUACUAC--GUCCAGUGUCACACAAUAGUAAUAGGUAAAUGGACAGACGGAAGGA 5'

 -27.60 1 KARR-seq