Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865807:139865851:[+] chr2:120576304:120576348:[+] nonBSJ supported Intron

circRNA 5':UUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGUC-----AGUGUCUUCCAG 3'


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target  3': AGGUA-UUCU--AGUUUCAUUAGA-CGACCGAUAAAUUGACGGACGGUA 5'

 -17.20 3 KARR-seq
chrX:139865807:139865831:[+] chr2:120576328:120576348:[+] nonBSJ supported Intron

circRNA 5':UUCCAGAAAGAAAUCCAGGUCUUCC 3'


            |||| |||| || |:|| ||


target  3': AGGUA-UUCU--AGUUUCAUUAGA 5'

 -10.50 3 KARR-seq