Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866624:139866670:[+] chr2:101768507:101768576:[+] nonBSJ supported Exon

circRNA 5':CUUCCAGCA--------UCUC-CA-------------------GGGCUUCCAGCAUCUGCUCGUCUUCCAACAUC 3'


            ||||||| |||| || |||| ||| ||| || |||:


target  3':AAAGGUCGAAAAGUUAAAGAGAGUCUUGUUUCCAAAAUAAAGACCCGUCC--CGU-GACU-GCCGCCAC-UGUGA 5'

 -24.70 2 KARR-seq
chrX:139866624:139866683:[+] chr2:101768495:101768576:[+] nonBSJ supported Exon

circRNA 5':CUUCCAGCA--------UCUC-CA-------------------GGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUCUUCCA 3'


            ||||||| |||| || |||| ||| ||| || |||: ||


target  3':AAAGGUCGAAAAGUUAAAGAGAGUCUUGUUUCCAAAAUAAAGACCCGUCC--CGU-GACU-GCCGCCAC-UGUGAUUAUAGCCAUGG 5'

 -26.00 2 KARR-seq
chrX:139866622:139866655:[+] chr2:101768465:101768500:[+] nonBSJ supported Exon

circRNA 5': GU-CUUCCA-GCAUCUCCAGGG-CUUCCAGCAUCUGC 3'


            || |:||| || || |||| | ||||| |:|||


target  3':CCAUGGAGGCCCGGUGAACUCCCUGCAGGUC-UGGAC 5'

 -29.00 4 KARR-seq