Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866513:139866531:[+] chr2:29148830:29148849:[+] nonBSJ supported Intron

circRNA 5':CGUCUUCCAAC-CAAGCCAU 3'


            ||| |||:|||


target  3':UCAGUCUACGUCGUUUGGUU 5'

 -10.80 2 KARR-seq
chrX:139866601:139866647:[+] chr2:29129469:29129521:[+] nonBSJ supported Intron

circRNA 5':CAUGUCUUCCUAUAUCUCCAGGUCUUCCAGCAUC--UCCAGG------GC--UUCCA 3'


            |||||| :|| ||:||| : |||||||| |||| | || ||||


target  3':UUACAGAC--GUA-AGGGGUGUUC-AGGUCGUAAAUAGGUGCAGAUAACGUAAAGGA 5'

 -35.60 1 KARR-seq