Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865943:139865950:[+] chr2:28182916:28182923:[+] nonBSJ supported Intron

circRNA 5':UGAAGAUC 3'


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target  3':UCUUCUAC 5'

 -6.10 2 KARR-seq
chrX:139865943:139865985:[+] chr2:28182880:28182923:[+] nonBSJ supported Intron

circRNA 5':UGAAGAUCCACGUCUUCCAGAAAAUCCA-UGUCUUCCA-GAAAAU 3'


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target  3':UCUUCUACUU-CACCCCUUUUUUUAGAUAACUUUACUUACUUUUU 5'

 -10.30 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:28182880:28182923:[+] target - chr2:28182907-28182908 T>C PACA-CA ICGC