Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866314:139866353:[+] chr2:9770563:9770583:[-] nonBSJ supported CDS

circRNA 5':AUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGU 3'


            |||||: :|||||| |||:||


target  3':AGUCGAG------------UCAGAAG-------AGGUACC 5'

 -18.10 1 KARR-seq
chrX:139866314:139866373:[+] chr2:9770563:9770603:[-] nonBSJ supported 5UTR

circRNA 5':AUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAAUCCAC-GUCU 3'


            |||||: :|||||| |||:|| || || |:|


target  3':AGUCGAG------------UCAGAAG-------AGGUACCGCCCG-CGCCCCGGCCCCGGC 5'

 -21.90 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866314:139866353:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866314:139866353:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866314:139866373:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC