Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865877:139865890:[+] chr19:57716950:57716961:[+] nonBSJ supported Intron

circRNA 5':CAGGUCUUCCAGUC 3'


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target  3':CUCCGGU--GUUAC 5'

 -7.30 2 KARR-seq
chrX:139865871:139865920:[+] chr19:57716990:57717040:[+] nonBSJ supported Intron

circRNA 5':CAAAUCCAGGUCUUCCAGUCAAUCCACA--UCUUCC--GGAAAAAAUCCAG-GUC 3'


            |||: |||||| |: |||| |||: |||| || || ||


target  3':UUUUGUGUCCAGUUUCCCG---AGGUACCGAGAGUUUACCUUGUA-AGAUCACAC 5'

 -21.00 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865871:139865920:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC